as.DESeqDataSet: Convert to DESeqDataSet
In DEFormats: Differential gene expression data formats converter
Description
Usage
Arguments
Value
Methods (by class)
Author(s)
See Also
Examples
Description
Coerces an object to DESeqDataSet.
Usage
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as.DESeqDataSet(x, ...)
## S3 method for class 'DGEList'
as.DESeqDataSet(x, ...)
Arguments
x
an R object
...
additional arguments to be passed to methods
Value
A DESeqDataSet object
Methods (by class)
-
DGEList: Coerce DGEList-class objects
to DESeqDataSet.
Author(s)
Andrzej Ole<c5><9b> <andrzej.oles@embl.de>, 2016-2017
See Also
Examples
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require("edgeR")
counts = simulateRnaSeqData()
group = rep(c("case", "control"), each = 3)
dge = DGEList(counts = counts, group = group)
dge
as.DESeqDataSet(dge)
DEFormats documentation built on Nov. 8, 2020, 5:31 p.m.
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Description Usage Arguments Value Methods (by class) Author(s) See Also Examples
Description
Coerces an object to DESeqDataSet.
Usage
1 2 3 4 | as.DESeqDataSet(x, ...)
## S3 method for class 'DGEList'
as.DESeqDataSet(x, ...)
|
Arguments
x |
an R object |
... |
additional arguments to be passed to methods |
Value
A DESeqDataSet object
Methods (by class)
-
DGEList: CoerceDGEList-classobjects toDESeqDataSet.
Author(s)
Andrzej Ole<c5><9b> <andrzej.oles@embl.de>, 2016-2017
See Also
Examples
1 2 3 4 5 6 7 8 9 | require("edgeR")
counts = simulateRnaSeqData()
group = rep(c("case", "control"), each = 3)
dge = DGEList(counts = counts, group = group)
dge
as.DESeqDataSet(dge)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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