as.DGEList: Convert to DGEList
In DEFormats: Differential gene expression data formats converter
Description
Usage
Arguments
Value
Methods (by class)
Author(s)
See Also
Examples
Description
Coerces an object to DGEList.
Usage
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as.DGEList(x, ...)
## S3 method for class 'DESeqDataSet'
as.DGEList(x, ...)
Arguments
x
an R object
...
additional arguments to be passed to methods
Value
A DGEList object.
Methods (by class)
-
DESeqDataSet: Coerce DESeqDataSet objects to
DGEList-class.
Author(s)
Andrzej Ole<c5><9b> <andrzej.oles@embl.de>, 2016-2017
See Also
Examples
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require("DESeq2")
se = simulateRnaSeqData(output = "RangedSummarizedExperiment")
se
dds = DESeqDataSet(se, design = ~ condition)
dds
as.DGEList(dds)
DEFormats documentation built on Nov. 8, 2020, 5:31 p.m.
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Description Usage Arguments Value Methods (by class) Author(s) See Also Examples
Description
Coerces an object to DGEList.
Usage
1 2 3 4 | as.DGEList(x, ...)
## S3 method for class 'DESeqDataSet'
as.DGEList(x, ...)
|
Arguments
x |
an R object |
... |
additional arguments to be passed to methods |
Value
A DGEList object.
Methods (by class)
-
DESeqDataSet: CoerceDESeqDataSetobjects toDGEList-class.
Author(s)
Andrzej Ole<c5><9b> <andrzej.oles@embl.de>, 2016-2017
See Also
Examples
1 2 3 4 5 6 7 8 9 | require("DESeq2")
se = simulateRnaSeqData(output = "RangedSummarizedExperiment")
se
dds = DESeqDataSet(se, design = ~ condition)
dds
as.DGEList(dds)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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