saveBplot: Save boxplots

In IVAS: Identification of genetic Variants affecting Alternative Splicing

Description

Save boxplots

Usage

    saveBplot(ASdb=ASdb,Total.snpdata=NULL,Total.snplocus=NULL,
                CalIndex=NULL,out.dir=NULL)

Arguments

ASdb	A ASdb object including "sQTLs" slot from the sQTLsFinder function.
Total.snpdata	A data frame of genotype data.
Total.snplocus	A data frame containing locus information of SNP markers in the snpdata.
CalIndex	An index number in the ASdb object which will be tested in this function.
out.dir	An output directory.

Value

This function draws the boxplot

Author(s)

Seonggyun Han, Sangsoo Kim

See Also

boxplot

Examples

    sampleDB <- system.file("extdata", "sampleDB", package="IVAS")
    sample.Txdb <- loadDb(sampleDB)
    data(sampleexp)
    data(samplesnp)
    data(samplesnplocus)
    ASdb <- Splicingfinder(sample.Txdb)
    ASdb <- RatioFromFPKM(sample.Txdb,ASdb,sampleexp)
    ASdb <- sQTLsFinder(ASdb,samplesnp,samplesnplocus,method="lm")
    saveBplot(ASdb=ASdb,Total.snpdata=samplesnp,Total.snplocus=samplesnplocus,CalIndex="ASS7",out.dir="./result")

IVAS documentation built on Nov. 8, 2020, 5:52 p.m.