saveBplot: Save boxplots

Description Usage Arguments Value Author(s) See Also Examples

View source: R/saveBplot.R

Description

Save boxplots

Usage

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    saveBplot(ASdb=ASdb,Total.snpdata=NULL,Total.snplocus=NULL,
                CalIndex=NULL,out.dir=NULL)

Arguments

ASdb

A ASdb object including "sQTLs" slot from the sQTLsFinder function.

Total.snpdata

A data frame of genotype data.

Total.snplocus

A data frame containing locus information of SNP markers in the snpdata.

CalIndex

An index number in the ASdb object which will be tested in this function.

out.dir

An output directory.

Value

This function draws the boxplot

Author(s)

Seonggyun Han, Sangsoo Kim

See Also

boxplot

Examples

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    sampleDB <- system.file("extdata", "sampleDB", package="IVAS")
    sample.Txdb <- loadDb(sampleDB)
    data(sampleexp)
    data(samplesnp)
    data(samplesnplocus)
    ASdb <- Splicingfinder(sample.Txdb)
    ASdb <- RatioFromFPKM(sample.Txdb,ASdb,sampleexp)
    ASdb <- sQTLsFinder(ASdb,samplesnp,samplesnplocus,method="lm")
    saveBplot(ASdb=ASdb,Total.snpdata=samplesnp,Total.snplocus=samplesnplocus,CalIndex="ASS7",out.dir="./result")

IVAS documentation built on Nov. 1, 2018, 2:10 a.m.