iASeq: iASeq: integrating multiple sequencing datasets for detecting allele-specific events
Version 1.20.0

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Browse man pages Browse package API and functions Browse package files

AuthorYingying Wei, Hongkai Ji
Bioconductor views ChIPSeq RNASeq SNP
Date of publicationNone
MaintainerYingying Wei <ywei@jhsph.edu>
LicenseGPL-2
Version1.20.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("iASeq")

Man pages

ASErawfit: Single Study Based Statistics for Allele Specific Events
iASeq-internal: iASeq Internal Functions
iASeqmotif: Correlation Motif Fit for Allele Specific Events
iASeq-package: iASeq: integrating multiple sequencing datasets for detecting...
plotBIC: BIC Plot
plotMotif: Correlation Motif Plot
sampleASE: Example Dataset for iASeq
singleEMfit: Single Study EM Fit for Allele Specific Events

Functions

ASErawfit Man page Source code
f0.loglike Man page Source code
fdown.loglike Man page Source code
fup.loglike Man page Source code
iASeq Man page
iASeq-package Man page
iASeqmotif Man page Source code
iASeqmotiffit Man page Source code
plotBIC Man page Source code
plotMotif Man page Source code
sampleASE Man page
sampleASE_exprs Man page
sampleASE_refid Man page
sampleASE_repid Man page
sampleASE_studyid Man page
singleEMfit Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/iASeq.R
build
build/vignette.rds
data
data/sampleASE.RData
inst
inst/CITATION
inst/doc
inst/doc/iASeqVignette.R
inst/doc/iASeqVignette.Rnw
inst/doc/iASeqVignette.pdf
man
man/ASErawfit.Rd
man/iASeq-internal.Rd
man/iASeq-package.Rd
man/iASeqmotif.Rd
man/plotBIC.Rd
man/plotMotif.Rd
man/sampleASE.Rd
man/singleEMfit.Rd
vignettes
vignettes/iASeqVignette.Rnw
iASeq documentation built on May 20, 2017, 9:24 p.m.