iASeq: iASeq: integrating multiple sequencing datasets for detecting allele-specific events

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It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author
Yingying Wei, Hongkai Ji
Date of publication
None
Maintainer
Yingying Wei <ywei@jhsph.edu>
License
GPL-2
Version
1.18.0

View on Bioconductor

Man pages

ASErawfit
Single Study Based Statistics for Allele Specific Events
iASeq-internal
iASeq Internal Functions
iASeqmotif
Correlation Motif Fit for Allele Specific Events
iASeq-package
iASeq: integrating multiple sequencing datasets for detecting...
plotBIC
BIC Plot
plotMotif
Correlation Motif Plot
sampleASE
Example Dataset for iASeq
singleEMfit
Single Study EM Fit for Allele Specific Events

Files in this package

iASeq/DESCRIPTION
iASeq/NAMESPACE
iASeq/R
iASeq/R/iASeq.R
iASeq/build
iASeq/build/vignette.rds
iASeq/data
iASeq/data/sampleASE.RData
iASeq/inst
iASeq/inst/CITATION
iASeq/inst/doc
iASeq/inst/doc/iASeqVignette.R
iASeq/inst/doc/iASeqVignette.Rnw
iASeq/inst/doc/iASeqVignette.pdf
iASeq/man
iASeq/man/ASErawfit.Rd
iASeq/man/iASeq-internal.Rd
iASeq/man/iASeq-package.Rd
iASeq/man/iASeqmotif.Rd
iASeq/man/plotBIC.Rd
iASeq/man/plotMotif.Rd
iASeq/man/sampleASE.Rd
iASeq/man/singleEMfit.Rd
iASeq/vignettes
iASeq/vignettes/iASeqVignette.Rnw