appreci8R: appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV

The appreci8R is an R version of our appreci8-algorithm - A Pipeline for PREcise variant Calling Integrating 8 tools. Variant calling results of our standard appreci8-tools (GATK, Platypus, VarScan, FreeBayes, LoFreq, SNVer, samtools and VarDict), as well as up to 5 additional tools is combined, evaluated and filtered.

Package details

AuthorSarah Sandmann
Bioconductor views GeneticVariability SNP Sequencing VariantAnnotation VariantDetection
MaintainerSarah Sandmann <[email protected]>
LicenseLGPL-3
Version1.0.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("appreci8R")

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appreci8R documentation built on Nov. 1, 2018, 5:01 a.m.