sandmanns/appreci8R: appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV

The appreci8R is an R version of our appreci8-algorithm - A Pipeline for PREcise variant Calling Integrating 8 tools. Variant calling results of our standard appreci8-tools (GATK, Platypus, VarScan, FreeBayes, LoFreq, SNVer, samtools and VarDict), as well as up to 5 additional tools is combined, evaluated and filtered.

Getting started

Package details

AuthorSarah Sandmann
Bioconductor views GeneticVariability SNP Sequencing VariantAnnotation VariantDetection
MaintainerSarah Sandmann <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
sandmanns/appreci8R documentation built on Dec. 7, 2020, 12:32 a.m.