Man pages for sandmanns/appreci8R
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
| annotate | Annotate and filter calls |
| appreci8R-package | appreci8R: an R/Bioconductor package for filtering SNVs and... |
| appreci8Rshiny | A user interface to perform the whole appreci8-analysis |
| combineOutput | Combine output of different variant calling tools |
| determineCharacteristics | Determine characteristics of the calls |
| evaluateCovAndBQ | Evaluate coverage and base quality |
| filterTarget | Excludes all off-target calls from further analysis. |
| finalFiltration | Perform final filtration according to the appreci8-algorithm |
| normalize | Normalize calls |
