GeneRegionScan: GeneRegionScan
Version 1.32.0

A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.

Getting started

Package details

AuthorLasse Folkersen, Diego Diez
Bioconductor views DataImport Microarray OneChannel SNP Visualization
MaintainerLasse Folkersen <lasfol@cbs.dtu.dk>
LicenseGPL (>= 2)
Version1.32.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GeneRegionScan")

Try the GeneRegionScan package in your browser

Any scripts or data that you put into this service are public.

GeneRegionScan documentation built on May 31, 2017, 3:35 p.m.