GeneRegionScan: GeneRegionScan

A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.

Getting started

Package details

AuthorLasse Folkersen, Diego Diez
Bioconductor views DataImport Microarray OneChannel SNP Visualization
MaintainerLasse Folkersen <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
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GeneRegionScan documentation built on Nov. 1, 2018, 3:06 a.m.