Man pages for GeneRegionScan
GeneRegionScan
| addSnpPdata | Add SNP data from hapmap-style data file to pData of... |
| checkForFileInPath | Check For File In Path |
| doProbeLinear | Do Probe Linear |
| doProbeTTest | Do Probe T-Test |
| exampleProbeLevelSet | Example Dataset of class 'ProbeLevelSet' |
| excludeDoubleMatchingProbes | Exclude ProbeLevelSet probes that match more than once in... |
| exonStructure | Add exon-structure to plots |
| findProbePositions | Find positions of probes on a gene |
| findSequenceInGenome | Find a sequence in genome |
| geneRegionScan | Gene Region Scan |
| genomic | genomic sequence of gene in ProbeLevelSet |
| getLocalMetaprobeIntensities | Get Metaprobe Intensities locally |
| getLocalProbeIntensities | Get Probe Intensities locally |
| getMetaprobesetsFromRegionOfInterest | Get Meta Probe Set IDs From Region Of Interest |
| getProbeLevelAnnotationForExonArrays | Get ProbeLevel Annotation for Exon Arrays |
| getProbesetsFromMetaprobeset | Get Probeset IDs From metaprobeset IDs |
| getProbesetsFromRegionOfInterest | Get Probeset IDs From Region Of Interest |
| getSequence | Get Sequence from a ProbeLevelSet |
| getServerProbeIntensities | Get Probe Intensities from a server |
| mrna | mRNA sequence of gene in ProbeLevelSet |
| Nondocumented-objects | Here goes every undocumented function. |
| plotCoexpression | Plot Coexpression of probes in a ProbeLevelSet |
| plotOnGene | Plot probe level data on a gene |
| plotStatistics | Plot Statistics |
| ProbeLevelSet-class | Class ProbeLevelSet |
| readGeneInput | Standardize reading of gene inputs |
| translateSampleNames | Translate sample names using translation file |
