sangerseqR: Tools for Sanger Sequencing Data in R

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

AuthorJonathon T. Hill, Bradley Demarest
Date of publicationNone
MaintainerJonathon Hill <jhill@byu.edu>
LicenseGPL-2
Version1.10.0

View on Bioconductor

Files in this package

sangerseqR/DESCRIPTION
sangerseqR/NAMESPACE
sangerseqR/R
sangerseqR/R/AllClasses.R sangerseqR/R/AllGenerics.R sangerseqR/R/PPPfunction.R sangerseqR/R/ReadFileFunctions.R sangerseqR/R/UnExportedFunctions.R sangerseqR/R/sangerseqmethods.R
sangerseqR/build
sangerseqR/build/vignette.rds
sangerseqR/inst
sangerseqR/inst/CITATION
sangerseqR/inst/PolyPeakParser
sangerseqR/inst/PolyPeakParser/example.ab1
sangerseqR/inst/PolyPeakParser/framed.sty
sangerseqR/inst/PolyPeakParser/fullpage.sty
sangerseqR/inst/PolyPeakParser/geometry.sty
sangerseqR/inst/PolyPeakParser/instructions.html
sangerseqR/inst/PolyPeakParser/needspace.sty
sangerseqR/inst/PolyPeakParser/pdflscape.sty
sangerseqR/inst/PolyPeakParser/peakparser_report.Rnw
sangerseqR/inst/PolyPeakParser/polypeakfunctions.R
sangerseqR/inst/PolyPeakParser/server.R
sangerseqR/inst/PolyPeakParser/ui.R
sangerseqR/inst/PolyPeakParser/www
sangerseqR/inst/PolyPeakParser/www/chromatogram.png
sangerseqR/inst/PolyPeakParser/www/logo.png
sangerseqR/inst/PolyPeakParser/www/logo2.png
sangerseqR/inst/PolyPeakParser/www/logo3.png
sangerseqR/inst/PolyPeakParser/www/styleupdates.css
sangerseqR/inst/doc
sangerseqR/inst/doc/sangerseq_walkthrough.R
sangerseqR/inst/doc/sangerseq_walkthrough.Rnw
sangerseqR/inst/doc/sangerseq_walkthrough.pdf
sangerseqR/inst/extdata
sangerseqR/inst/extdata/heterozygous.ab1
sangerseqR/inst/extdata/heterozygous.scf
sangerseqR/inst/extdata/homozygous.scf
sangerseqR/inst/extdata/noprintabif.ab1
sangerseqR/inst/testData
sangerseqR/inst/testData/heterozygousabif.rds
sangerseqR/inst/testData/heterozygousscf.rds
sangerseqR/inst/testData/noprintabif.rds
sangerseqR/inst/unitTests
sangerseqR/inst/unitTests/test_readfilefunctions.R
sangerseqR/man
sangerseqR/man/PolyPeakParser.Rd sangerseqR/man/abif-class.Rd sangerseqR/man/chromatogram.Rd sangerseqR/man/makeBaseCalls.Rd sangerseqR/man/read.abif.Rd sangerseqR/man/read.scf.Rd sangerseqR/man/readsangerseq.Rd sangerseqR/man/sangerseq-class.Rd sangerseqR/man/sangerseqAccessors.Rd sangerseqR/man/sangerseqR-package.Rd sangerseqR/man/scf-class.Rd sangerseqR/man/setAllelePhase.Rd
sangerseqR/tests
sangerseqR/tests/runTests.R
sangerseqR/vignettes
sangerseqR/vignettes/sangerseq_walkthrough.Rnw

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