ldblock: data structures for linkage disequilibrium measures in populations
Version 1.6.0

Define data structures for linkage disequilibrium measures in populations.

AuthorVJ Carey <stvjc@channing.harvard.edu>
Bioconductor views GWAS LinkageDisequilibrium SNP genetics
Date of publicationNone
MaintainerVJ Carey <stvjc@channing.harvard.edu>
LicenseArtistic-2.0
Version1.6.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ldblock")

Getting started

Package overview
ldblock package: linkage disequilibrium data structures

Popular man pages

downloadPopByChr: download hapmap resource with LD estimates
expandSnpSet: Given a set of SNP identifiers, use LD to expand the set to...
hmld: import hapmap LD data and create a structure for its...
ldblock-package: data structures for linkage disequilibrium measures in...
ldByGene: obtain LD statistics in region specified by a gene model
ldstruct-class: Class '"ldstruct"'
s3_1kg: Create a URL referencing 1000 genomes content in AWS S3
See all...

All man pages Function index File listing

Man pages

downloadPopByChr: download hapmap resource with LD estimates
expandSnpSet: Given a set of SNP identifiers, use LD to expand the set to...
hmld: import hapmap LD data and create a structure for its...
ldblock-package: data structures for linkage disequilibrium measures in...
ldByGene: obtain LD statistics in region specified by a gene model
ldstruct-class: Class '"ldstruct"'
s3_1kg: Create a URL referencing 1000 genomes content in AWS S3

Functions

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/hmld.R
R/ldByGene.R
R/s3_1kg.R
build
build/partial.rdb
build/vignette.rds
inst
inst/doc
inst/doc/ldblock.R
inst/doc/ldblock.Rmd
inst/doc/ldblock.pdf
inst/hapmap
inst/hapmap/ld_chr17_CEU.txt.gz
inst/unitTests
inst/unitTests/checks.R
man
man/downloadPopByChr.Rd
man/expandSnpSet.Rd
man/hmld.Rd
man/ldByGene.Rd
man/ldblock-package.Rd
man/ldstruct-class.Rd
man/s3_1kg.Rd
tests
tests/ldblock_unit_tests.R
vignettes
vignettes/ldblock.Rmd
ldblock documentation built on May 20, 2017, 10:07 p.m.

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