ldblock: data structures for linkage disequilibrium measures in populations

Define data structures for linkage disequilibrium measures in populations.

Author
VJ Carey <stvjc@channing.harvard.edu>
Date of publication
None
Maintainer
VJ Carey <stvjc@channing.harvard.edu>
License
Artistic-2.0
Version
1.4.0

View on Bioconductor

Man pages

downloadPopByChr
download hapmap resource with LD estimates
expandSnpSet
Given a set of SNP identifiers, use LD to expand the set to...
hmld
import hapmap LD data and create a structure for its...
ldblock-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("ldblock")}
ldstruct-class
Class '"ldstruct"'

Files in this package

ldblock/DESCRIPTION
ldblock/NAMESPACE
ldblock/R
ldblock/R/hmld.R
ldblock/build
ldblock/build/partial.rdb
ldblock/build/vignette.rds
ldblock/inst
ldblock/inst/doc
ldblock/inst/doc/ldblock.R
ldblock/inst/doc/ldblock.Rmd
ldblock/inst/doc/ldblock.pdf
ldblock/inst/hapmap
ldblock/inst/hapmap/ld_chr17_CEU.txt.gz
ldblock/inst/unitTests
ldblock/inst/unitTests/checks.R
ldblock/man
ldblock/man/downloadPopByChr.Rd
ldblock/man/expandSnpSet.Rd
ldblock/man/hmld.Rd
ldblock/man/ldblock-package.Rd
ldblock/man/ldstruct-class.Rd
ldblock/tests
ldblock/tests/ldblock_unit_tests.R
ldblock/vignettes
ldblock/vignettes/ldblock.Rmd