GMRP: GWAS-based Mendelian Randomization and Path Analyses
Version 1.4.0

Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

Browse man pages Browse package API and functions Browse package files

AuthorYuan-De Tan and Dajiang Liu
Bioconductor views Regression SNP Sequencing
Date of publicationNone
MaintainerYuan-De Tan <tanyuande@gmail.com>
LicenseGPL (>= 2)
Version1.4.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GMRP")

Man pages

beta.data: Beta Data Of SNP Regressed on Causal Variables and Disease
cad.data: boldGWAS Meta-analyzed Data of Coronary Artery Disease
chrp: Split hg19
fmerg: Merge Two *GWAS* Result Data Sheets
GMRP-package: *GWAS*-based Mendelian Randomization Path Analysis
lpd.data: *GWAS* Meta-analyzed Data of Lipoprotein Cholesterols
mktable: Selection of SNPs and Creation of A Standard Table for...
path: Path Analysis
pathdiagram: Path Diagram
pathdiagram2: Two-level Nested Pathdiagram
SNP358.data: Data of 358 SNPs
SNP368annot.data: Annotation data of 368SNPs
snpposit: _SNP_ Position Annotation
ucscannot: Functional Annotation of _SNP_s Chosen

Functions

GMRP Man page
GMRP-package Man page
SNP358.data Man page
SNP368annot.data Man page
beta.data Man page
cad.data Man page
chrp Man page Source code
fmerg Man page Source code
lpd.data Man page
mktable Man page Source code
path Man page Source code
pathdiagram Man page Source code
pathdiagram2 Man page Source code
snpposit Man page Source code
ucscannot Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/chrp.R
R/fmerg.R
R/mktable.R
R/path.R
R/pathdiagram.R
R/pathdiagram2.R
R/snpposit.R
R/ucscannot.R
build
build/vignette.rds
data
data/SNP358.data.rda
data/SNP368annot.data.rda
data/beta.data.rda
data/cad.data.rda
data/lpd.data.rda
inst
inst/doc
inst/doc/GMRP.R
inst/doc/GMRP.Rnw
inst/doc/GMRP.pdf
man
man/GMRP-package.Rd
man/SNP358.data.Rd
man/SNP368annot.data.Rd
man/beta.data.Rd
man/cad.data.Rd
man/chrp.Rd
man/fmerg.Rd
man/lpd.data.Rd
man/mktable.Rd
man/path.Rd
man/pathdiagram.Rd
man/pathdiagram2.Rd
man/snpposit.Rd
man/ucscannot.Rd
vignettes
vignettes/GMRP.Rnw
GMRP documentation built on May 20, 2017, 9:55 p.m.