GMRP: GWAS-based Mendelian Randomization and Path Analyses

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Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

Author
Yuan-De Tan and Dajiang Liu
Date of publication
None
Maintainer
Yuan-De Tan <tanyuande@gmail.com>
License
GPL (>= 2)
Version
1.2.0

View on Bioconductor

Man pages

beta.data
Beta Data Of SNP Regressed on Causal Variables and Disease
cad.data
boldGWAS Meta-analyzed Data of Coronary Artery Disease
chrp
Split hg19
fmerg
Merge Two *GWAS* Result Data Sheets
GMRP-package
*GWAS*-based Mendelian Randomization Path Analysis
lpd.data
*GWAS* Meta-analyzed Data of Lipoprotein Cholesterols
mktable
Selection of SNPs and Creation of A Standard Table for...
path
Path Analysis
pathdiagram
Path Diagram
pathdiagram2
Two-level Nested Pathdiagram
SNP358.data
Data of 358 SNPs
SNP368annot.data
Annotation data of 368SNPs
snpposit
_SNP_ Position Annotation
ucscannot
Functional Annotation of _SNP_s Chosen

Files in this package

GMRP/DESCRIPTION
GMRP/NAMESPACE
GMRP/R
GMRP/R/chrp.R
GMRP/R/fmerg.R
GMRP/R/mktable.R
GMRP/R/path.R
GMRP/R/pathdiagram.R
GMRP/R/pathdiagram2.R
GMRP/R/snpposit.R
GMRP/R/ucscannot.R
GMRP/build
GMRP/build/vignette.rds
GMRP/data
GMRP/data/SNP358.data.rda
GMRP/data/SNP368annot.data.rda
GMRP/data/beta.data.rda
GMRP/data/cad.data.rda
GMRP/data/lpd.data.rda
GMRP/inst
GMRP/inst/doc
GMRP/inst/doc/GMRP.R
GMRP/inst/doc/GMRP.Rnw
GMRP/inst/doc/GMRP.pdf
GMRP/man
GMRP/man/GMRP-package.Rd
GMRP/man/SNP358.data.Rd
GMRP/man/SNP368annot.data.Rd
GMRP/man/beta.data.Rd
GMRP/man/cad.data.Rd
GMRP/man/chrp.Rd
GMRP/man/fmerg.Rd
GMRP/man/lpd.data.Rd
GMRP/man/mktable.Rd
GMRP/man/path.Rd
GMRP/man/pathdiagram.Rd
GMRP/man/pathdiagram2.Rd
GMRP/man/snpposit.Rd
GMRP/man/ucscannot.Rd
GMRP/vignettes
GMRP/vignettes/GMRP.Rnw