ensemblVEP: R Interface to Ensembl Variant Effect Predictor

Query the Ensembl Variant Effect Predictor via the perl API

AuthorValerie Obenchain
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.14.0

View on Bioconductor

Functions

advanced Man page
advanced<- Man page
advancedOpts Man page
advanced<-,VEPParam-method Man page
advanced,VEPParam-method Man page
basic Man page
basic<- Man page
basicOpts Man page
basic<-,VEPParam-method Man page
basic,VEPParam-method Man page
cache Man page
cache<- Man page
cacheOpts Man page
cache<-,VEPParam-method Man page
cache,VEPParam-method Man page
class:VEPParam Man page
class:VEPParam67 Man page
class:VEPParam73 Man page
class:VEPParam75 Man page
class:VEPParam77 Man page
class:VEPParam78 Man page
class:VEPParam82 Man page
colocatedVariants Man page
colocatedVariants<- Man page
colocatedVariantsOpts Man page
colocatedVariants<-,VEPParam73-method Man page
colocatedVariants,VEPParam73-method Man page
colocatedVariants<-,VEPParam75-method Man page
colocatedVariants,VEPParam75-method Man page
colocatedVariants<-,VEPParam77-method Man page
colocatedVariants,VEPParam77-method Man page
colocatedVariants<-,VEPParam78-method Man page
colocatedVariants,VEPParam78-method Man page
colocatedVariants<-,VEPParam82-method Man page
colocatedVariants,VEPParam82-method Man page
currentVEP Man page
database Man page
database<- Man page
databaseOpts Man page
database<-,VEPParam-method Man page
database,VEPParam-method Man page
dataformat Man page
dataformat<- Man page
dataformatOpts Man page
dataformat<-,VEPParam73-method Man page
dataformat,VEPParam73-method Man page
dataformat<-,VEPParam75-method Man page
dataformat,VEPParam75-method Man page
dataformat<-,VEPParam77-method Man page
dataformat,VEPParam77-method Man page
dataformat<-,VEPParam78-method Man page
dataformat,VEPParam78-method Man page
dataformat<-,VEPParam82-method Man page
dataformat,VEPParam82-method Man page
ensemblVEP Man page
ensemblVEP,character-method Man page
filterqc Man page
filterqc<- Man page
filterqcOpts Man page
filterqc<-,VEPParam-method Man page
filterqc,VEPParam-method Man page
identifier Man page
identifier<- Man page
identifierOpts Man page
identifier<-,VEPParam73-method Man page
identifier,VEPParam73-method Man page
identifier<-,VEPParam75-method Man page
identifier,VEPParam75-method Man page
identifier<-,VEPParam77-method Man page
identifier,VEPParam77-method Man page
identifier<-,VEPParam78-method Man page
identifier,VEPParam78-method Man page
identifier<-,VEPParam82-method Man page
identifier,VEPParam82-method Man page
input Man page
input<- Man page
inputOpts Man page
input<-,VEPParam-method Man page
input,VEPParam-method Man page
output Man page
output<- Man page
outputOpts Man page
output<-,VEPParam-method Man page
output,VEPParam-method Man page
parseCSQToGRanges Man page
parseCSQToGRanges,character-method Man page
parseCSQToGRanges,VCF-method Man page
runtimeOptions Man page
scriptPath Man page
scriptPath<- Man page
show,VEPParam-method Man page
supportedVEP Man page
VEPParam Man page
VEPParam67-class Man page
VEPParam73-class Man page
VEPParam75-class Man page
VEPParam77-class Man page
VEPParam78-class Man page
VEPParam82-class Man page
VEPParam-class Man page
version Man page
version<- Man page

Files

ensemblVEP/.BBSoptions
ensemblVEP/DESCRIPTION
ensemblVEP/NAMESPACE
ensemblVEP/NEWS
ensemblVEP/R
ensemblVEP/R/AllClasses.R ensemblVEP/R/AllGenerics.R ensemblVEP/R/methods-VEPParam-class.R ensemblVEP/R/methods-VEPParam67-class.R ensemblVEP/R/methods-VEPParam73-class.R ensemblVEP/R/methods-VEPParam75-class.R ensemblVEP/R/methods-VEPParam77-class.R ensemblVEP/R/methods-VEPParam78-class.R ensemblVEP/R/methods-VEPParam82-class.R ensemblVEP/R/methods-ensemblVEP.R ensemblVEP/R/methods-parseCSQToGRanges.R ensemblVEP/R/runtimeOptions.R ensemblVEP/R/test_ensemblVEP_package.R ensemblVEP/R/zzz.R
ensemblVEP/README
ensemblVEP/build
ensemblVEP/build/vignette.rds
ensemblVEP/inst
ensemblVEP/inst/doc
ensemblVEP/inst/doc/ensemblVEP.R
ensemblVEP/inst/doc/ensemblVEP.Rnw
ensemblVEP/inst/doc/ensemblVEP.pdf
ensemblVEP/inst/extdata
ensemblVEP/inst/extdata/ex2.vcf.txt
ensemblVEP/inst/extdata/whitespaceFormat.txt
ensemblVEP/inst/unitTests
ensemblVEP/inst/unitTests/test_VEPParam.R
ensemblVEP/inst/unitTests/test_ensemblVEP.R
ensemblVEP/man
ensemblVEP/man/VEPParam-class.Rd ensemblVEP/man/ensemblVEP.Rd ensemblVEP/man/parseCSQToGRanges.Rd ensemblVEP/man/runtimeOptions.Rd
ensemblVEP/tests
ensemblVEP/tests/runTests.R
ensemblVEP/vignettes
ensemblVEP/vignettes/ensemblVEP.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.