ensemblVEP: R Interface to Ensembl Variant Effect Predictor

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Query the Ensembl Variant Effect Predictor via the perl API

Author
Valerie Obenchain
Date of publication
None
Maintainer
Bioconductor Package Maintainer <maintainer@bioconductor.org>
License
Artistic-2.0
Version
1.14.0

View on Bioconductor

Man pages

ensemblVEP
Query Ensembl Variant Effect Predictor
parseCSQToGRanges
Parse the CSQ column of a VCF object into a GRanges object
runtimeOptions
VEPParam runtime options
VEPParam-class
VEPParam objects

Files in this package

ensemblVEP/.BBSoptions
ensemblVEP/DESCRIPTION
ensemblVEP/NAMESPACE
ensemblVEP/NEWS
ensemblVEP/R
ensemblVEP/R/AllClasses.R
ensemblVEP/R/AllGenerics.R
ensemblVEP/R/methods-VEPParam-class.R
ensemblVEP/R/methods-VEPParam67-class.R
ensemblVEP/R/methods-VEPParam73-class.R
ensemblVEP/R/methods-VEPParam75-class.R
ensemblVEP/R/methods-VEPParam77-class.R
ensemblVEP/R/methods-VEPParam78-class.R
ensemblVEP/R/methods-VEPParam82-class.R
ensemblVEP/R/methods-ensemblVEP.R
ensemblVEP/R/methods-parseCSQToGRanges.R
ensemblVEP/R/runtimeOptions.R
ensemblVEP/R/test_ensemblVEP_package.R
ensemblVEP/R/zzz.R
ensemblVEP/README
ensemblVEP/build
ensemblVEP/build/vignette.rds
ensemblVEP/inst
ensemblVEP/inst/doc
ensemblVEP/inst/doc/ensemblVEP.R
ensemblVEP/inst/doc/ensemblVEP.Rnw
ensemblVEP/inst/doc/ensemblVEP.pdf
ensemblVEP/inst/extdata
ensemblVEP/inst/extdata/ex2.vcf.txt
ensemblVEP/inst/extdata/whitespaceFormat.txt
ensemblVEP/inst/unitTests
ensemblVEP/inst/unitTests/test_VEPParam.R
ensemblVEP/inst/unitTests/test_ensemblVEP.R
ensemblVEP/man
ensemblVEP/man/VEPParam-class.Rd
ensemblVEP/man/ensemblVEP.Rd
ensemblVEP/man/parseCSQToGRanges.Rd
ensemblVEP/man/runtimeOptions.Rd
ensemblVEP/tests
ensemblVEP/tests/runTests.R
ensemblVEP/vignettes
ensemblVEP/vignettes/ensemblVEP.Rnw