API for ensemblVEP
R Interface to Ensembl Variant Effect Predictor

Global functions
.checkLogicals Source code
.checkNames Source code
.colocatedVariants_setter Source code
.dataformat_setter Source code
.formatList Source code
.getVepPath Source code
.identifier_setter Source code
.onAttach Source code
.show Source code
.test Source code
.valid.VEPParam.advanced Source code
.valid.VEPParam.basic Source code
.valid.VEPParam.cache Source code
.valid.VEPParam.colocated Source code
.valid.VEPParam.database Source code
.valid.VEPParam.dataformat Source code
.valid.VEPParam.filterqc Source code
.valid.VEPParam.identifier Source code
.valid.VEPParam.input Source code
.valid.VEPParam.output Source code
.valid.VEPParam.scriptname Source code
.valid.VEPParam.version Source code
.version_error Source code
VEPFlags Man page Source code
VEPFlags-class Man page
VEPParam Man page Source code
VEPParam-class Man page
VEPParam67-class Man page
VEPParam73-class Man page
VEPParam75-class Man page
VEPParam77-class Man page
VEPParam78-class Man page
VEPParam82-class Man page
VEPParam88-class Man page
`scriptPath<-` Source code
`version<-` Source code
advanced Man page
advanced,VEPParam-method Man page
advanced<- Man page
advanced<-,VEPParam-method Man page
advancedOpts Man page Source code
basic Man page
basic,VEPParam-method Man page
basic<- Man page
basic<-,VEPParam-method Man page
basicOpts Man page Source code
cache Man page
cache,VEPParam-method Man page
cache<- Man page
cache<-,VEPParam-method Man page
cacheOpts Man page Source code
class:VEPFlags Man page
class:VEPParam Man page
class:VEPParam67 Man page
class:VEPParam73 Man page
class:VEPParam75 Man page
class:VEPParam77 Man page
class:VEPParam78 Man page
class:VEPParam82 Man page
class:VEPParam88 Man page
colocatedVariants Man page
colocatedVariants,VEPParam73-method Man page
colocatedVariants,VEPParam75-method Man page
colocatedVariants,VEPParam77-method Man page
colocatedVariants,VEPParam78-method Man page
colocatedVariants,VEPParam82-method Man page
colocatedVariants,VEPParam88-method Man page
colocatedVariants<- Man page
colocatedVariants<-,VEPParam73-method Man page
colocatedVariants<-,VEPParam75-method Man page
colocatedVariants<-,VEPParam77-method Man page
colocatedVariants<-,VEPParam78-method Man page
colocatedVariants<-,VEPParam82-method Man page
colocatedVariants<-,VEPParam88-method Man page
colocatedVariantsOpts Man page Source code
currentVEP Man page Source code
database Man page
database,VEPParam-method Man page
database<- Man page
database<-,VEPParam-method Man page
databaseOpts Man page Source code
dataformat Man page
dataformat,VEPParam73-method Man page
dataformat,VEPParam75-method Man page
dataformat,VEPParam77-method Man page
dataformat,VEPParam78-method Man page
dataformat,VEPParam82-method Man page
dataformat,VEPParam88-method Man page
dataformat<- Man page
dataformat<-,VEPParam73-method Man page
dataformat<-,VEPParam75-method Man page
dataformat<-,VEPParam77-method Man page
dataformat<-,VEPParam78-method Man page
dataformat<-,VEPParam82-method Man page
dataformat<-,VEPParam88-method Man page
dataformatOpts Man page Source code
ensemblVEP Man page
ensemblVEP,character-method Man page
filterqc Man page
filterqc,VEPParam-method Man page
filterqc<- Man page
filterqc<-,VEPParam-method Man page
filterqcOpts Man page Source code
flagOpts Man page Source code
flags Man page
flags,VEPFlags-method Man page
flags<- Man page
flags<-,VEPFlags-method Man page
identifier Man page
identifier,VEPParam73-method Man page
identifier,VEPParam75-method Man page
identifier,VEPParam77-method Man page
identifier,VEPParam78-method Man page
identifier,VEPParam82-method Man page
identifier,VEPParam88-method Man page
identifier<- Man page
identifier<-,VEPParam73-method Man page
identifier<-,VEPParam75-method Man page
identifier<-,VEPParam77-method Man page
identifier<-,VEPParam78-method Man page
identifier<-,VEPParam82-method Man page
identifier<-,VEPParam88-method Man page
identifierOpts Man page Source code
input Man page
input,VEPParam-method Man page
input<- Man page
input<-,VEPParam-method Man page
inputOpts Man page Source code
oldRuntimeOptions Man page
output Man page
output,VEPParam-method Man page
output<- Man page
output<-,VEPParam-method Man page
outputOpts Man page Source code
parseCSQToGRanges Man page
parseCSQToGRanges,VCF-method Man page
parseCSQToGRanges,character-method Man page
runtimeOptions Man page
scriptPath Man page Source code
scriptPath<- Man page
show,VEPFlags-method Man page
show,VEPParam-method Man page
supportedVEP Man page Source code
version Man page Source code
version<- Man page
ensemblVEP documentation built on Oct. 31, 2019, 2:08 a.m.