inveRsion: Inversions in genotype data

Package to find genetic inversions in genotype (SNP array) data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("inveRsion")
AuthorAlejandro Caceres
Bioconductor views Microarray SNP
Date of publicationNone
MaintainerAlejandro Caceres <acaceres@creal.cat>
LicenseGPL (>= 2)
Version1.24.0

View on Bioconductor

Functions

ac Man page
accBic Man page
accBic,inversionList-method Man page
accBic-methods Man page
accuracy-class Man page
callEncode Man page
codeHaplo Man page
datChr Man page
encodeGeno Man page
encodeGenoAcross Man page
encodeHaplo Man page
.First.lib Man page
flipGeno Man page
gDat Man page
GenoDat-class Man page
GenoDatROI-class Man page
getb1b2 Man page
getblockLocB12 Man page
getClassif Man page
getClassif,inversionList-method Man page
getClassif-methods Man page
getInv Man page
getInv-methods Man page
getInv,scan-method Man page
getROIs Man page
getROIs-methods Man page
getROIs,scan-method Man page
hapCode Man page
HaploCode-class Man page
initialize,GenoDatROI-method Man page
initialize,HaploCode-method Man page
int2bit Man page
inveRsion Man page
inversion-class Man page
inversionList-class Man page
inveRsion-package Man page
invList Man page
iterateInversionModel Man page
.Last.lib Man page
listInv Man page
listInv-methods Man page
listInv,scan-method Man page
manual Man page
plot,accuracy-method Man page
plot,GenoDat-method Man page
plot,inversionList-method Man page
plot,scan-method Man page
ROIGenoDat Man page
scan-class Man page
scanInv Man page
scanRes Man page
setUpGenoDatFile Man page
setUpGenoDatSNPmat Man page
show,GenoDat-method Man page
show,GenoDatROI-method Man page
show,HaploCode-method Man page
show,inversionList-method Man page
show,scan-method Man page
writeFilegenoDat Man page

Files

DESCRIPTION
NAMESPACE
NEWS.txt
R
R/HaploCodeClass.R R/genoDatClass.R R/inversionListClass.R R/scanClass.R R/zzz.R
build
build/vignette.rds
data
data/ac.RData
data/gDat.RData
data/hapCode.RData
data/invList.RData
data/scanRes.RData
inst
inst/doc
inst/doc/inveRsion.R
inst/doc/inveRsion.Rnw
inst/doc/inveRsion.pdf
inst/extdata
inst/extdata/genotypes.txt
inst/extdata/h.txt
inst/extdata/haplotypesROI.txt
inst/extdata/mem.txt
man
man/GenoDat-class.Rd man/GenoDatROI-class.Rd man/HaploCode-class.Rd man/ac.Rd man/accBic.Rd man/accuracy-class.Rd man/codeHaplo.Rd man/gDat.Rd man/getClassif-methods.Rd man/getInv-methods.Rd man/getROIs-methods.Rd man/hapCode.Rd man/invList.Rd man/inveRsion-internal.Rd man/inveRsion-package.Rd man/inversion-class.Rd man/inversionList-class.Rd man/listInv-methods.Rd man/scan-class.Rd man/scanInv.Rd man/scanRes.Rd man/setUpGenoDatFile.Rd
src
src/Makevars
src/init_inveRsion.c
src/inversion.h
src/inversionModel.c
src/writeGenoDat.c
vignettes
vignettes/Manual.pdf
vignettes/inveRsion.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.