scanRes: Sample data set of class scan

In inveRsion: Inversions in genotype data

Description

Sample set that illustrates the result of scanning a chromosome with segments of fix window size. It fits the inversion model for each segment and stores its results.

Usage

data(scanRes)

Format

The format is: Formal class 'scan' [package "inveRsion"] with 10 slots ..@ leftBP : num [1:189, 1] 0.603 0.604 0.606 0.609 0.612 ... ..@ rightBP : num [1:189, 1] 1.15 1.15 1.15 1.15 1.15 ... ..@ leftBP2 : num [1:189, 1] 0.604 0.606 0.608 0.609 0.612 ... ..@ rightBP2: num [1:189, 1] 1.15 1.15 1.15 1.15 1.15 ... ..@ LogLike : num [1:189, 1] 27.2 45.4 89.8 108.2 113.3 ... ..@ prob : num [1:189, 1] 0.996 0.987 0.947 0.936 0.946 ... ..@ ent : num [1:189, 1] 2.41 2.33 2.78 2.87 2.92 ... ..@ entTh : num [1:189, 1] 29 23 26 30 24 28 20 21 24 20 ... ..@ bic : num [1:189, 1] -193.2 -129.4 -107.8 -119.8 -69.1 ... ..@ window : num 0.5

Details

The object is constructed with the function scanInv and used as an input for listInv.

Examples

data(scanRes)
plot(scanRes) 

inveRsion documentation built on Nov. 8, 2020, 5:08 p.m.