inversionList-class: Class "inversionList"

In inveRsion: Inversions in genotype data

Description

Lists output of the inversion model for each region of interest specified.

Objects from the Class

Objects can be created by calls of the form listInv(object, hapCode, geno, ROI, saveRes, thBic, all) and are lists of inversion objects.

Slots

results:

Object of class "list" list of inversion objects

Methods

accBic

signature(object = "inversionList"): Computes accuracy for chromosome classification when known

getClassif

signature(object = "inversionList"): Extracts classification for each chromosome

plot

signature(x = "inversionList"): Plots BIC values for trial segments

show

signature(object = "inversionList"): shows object

Author(s)

Alejandro Caceres [e-mail]

See Also

listInv, HaploCode

Examples

data(invList)
invList

Example output

Loading required package: haplo.stats


Hola!

welcome to inevRsion package. 
 
 

type: manual() for full manual 
      vignette("inveRsion") for a quick start 

-Showing object of class: inversionList- 

    LBPmin   LBPmax   RBPmin   RBPmax  MaxBic invFreq ModelNum
1 0.742854 0.757891 1.243445 1.258031 2551.44  0.4135       18

inveRsion documentation built on Nov. 8, 2020, 5:08 p.m.