getInv-methods: gets "scan" into a matrix

In inveRsion: Inversions in genotype data

Description

Each row of the matrix represents a trial segment of fixed window size, for which the inversion model has been fit. It lists the left and right brake-points and output of the fitting: Log-likelihood ratio, probability of inversion, entropy, BIC (Bayes Information Criterion) and number of haplotypes.

Usage

getInv(object, thBic, rnd, Like)

Arguments

object	scan. Cromosome scanned for inversions with trial segments of fixed window size.
thBic	numeric. BIC threshold above which data is retrieved.
rnd	logic. Whether round matrix elements.
Like	numeric. Log-likelihood ratio threshold above which data is retrieved.

Details

Matrix with output of scanInv. Each row corresponds to a trail segments with given brake points and significance measures for the inversion model.

Value

matrix.

Methods

signature(object = "scan")

returns matrix with output of inversion model for each trial segment

Examples

data(scanRes)
a<-getInv(scanRes,thBic=2500)
a

inveRsion documentation built on Nov. 8, 2020, 5:08 p.m.