HaploCode-class: Class "HaploCode"

In inveRsion: Inversions in genotype data

Description

The object stores the haplotype coding for each of the candidate brake-points. It is typically generated by calling the function codeHaplo on a GenoDat object.

Objects from the Class

Objects can be created by calls of codeHaplo(objectGenoDat, blockSize, minAllele, saveRes = TRUE, file = NULL, ROI)

Slots

haploCode:

Object of class "matrix" Haplotype coding into decimal integers

blockSize:

Object of class "numeric" block size of SNP used to identify the haplotype of each candidate brake-point.

minAllele:

Object of class "numeric" minimum allele above which candidate brake-points are considered

Methods

initialize

signature(.Object = "HaploCode"): Internal, users should use codeHaplo

show

signature(object = "HaploCode"): shows HaploCode

Author(s)

Alejandro Caceres [e-mail]

See Also

codeHaplo, GenoDat

Examples

data(gDat)
hapCode <-codeHaplo(gDat,blockSize=3,minAllele=0.3,saveRes=FALSE)
hapCode

inveRsion documentation built on Nov. 8, 2020, 5:08 p.m.