getClassif-methods: Overall classification

In inveRsion: Inversions in genotype data

Description

Classifies into inverted or non-inverted populations each chromosome in the sample.

Usage

getClassif(object, thBic, wROI, bin,geno,id,nmod)

Arguments

object	inversionList. List of inversions obtained from a chromosome scan.
thBic	numeric. BIC threshold above which significant segments are chosen for the final classification
wROI	numeric. ROI number from the list to select classification
bin	logic. Whether binary or continous classification is retrieved
geno	logic. Whether inversion genotype is retrieved
id	character. Vector of subject IDs
nmod	numeric. number of trial segments to be used in the classification counting from the trial segments with highest BIC downwards.

Details

The overall classification of chromosomes into inverted and non-inverted populations is given by the weighted average of the classifications obtained for each trial segment in the ROI, with BIC greater than thBic.

Value

numeric. Vector with values between 0 and 1 representing membership to the non-inverted and inverted population respectively.

Methods

signature(object = "inversionList")

for each of the inversions of the list, it returns the classification of each chromosome.

Author(s)

Alejandro Caceres [e-mail]

See Also

inversionList

Examples

data(invList)
r<-getClassif(invList)
head(r)

inveRsion documentation built on Nov. 8, 2020, 5:08 p.m.