GenoDatROI-class: Class "GenoDatROI"

In inveRsion: Inversions in genotype data

Description

GenoDat defined within an region of interest

Usage

ROIGenoDat(objectGenoDat, ROI)

Arguments

objectGenoDat	GenoDat
ROI	numeric. Region of interest. 2-component vector that defines the limits of a chromosome segments where an inversions is thought to occur.

Details

ROIGenoDat is the constructor of the class.

Objects from the Class

object are created with calls to ROIGenoDat(objectGenoDat, ROI)

Slots

genoDat:

"matrix" . Genotypes

lociPos:

"numeric". Genomic coordinates

alleleSum:

"matrix". Total number of variant alleles in the population per SNP

noMissCount:

"matrix". Total number of subjects with no-missing values

ROI:

"numeric". Region of interest.

Extends

Class "GenoDat", directly.

Methods

initialize

signature(.Object = "GenoDatROI")

show

signature(object = "GenoDatROI")

Author(s)

Alejandro Caceres [e-mail]

See Also

GenoDat

Examples

data(gDat)
gDatROI<-ROIGenoDat(gDat,ROI=c(1268,1847))
gDatROI

inveRsion documentation built on Nov. 8, 2020, 5:08 p.m.