gDat: Sample data of class genoDat

In inveRsion: Inversions in genotype data

Description

Data set used to illustrate local haplotype coding performed with codeHaplo

Usage

data(gDat)

Format

The format is: Formal class 'GenoDat' [package "inveRsion"] with 4 slots ..@ genoDat : int [1:9, 1:10] 0 1 0 1 0 0 1 0 0 1 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:9] "V1" "V2" "V3" "V4" ... .. .. ..$ : NULL ..@ lociPos : Named int [1:10] 959 1268 1393 1467 1531 1761 1847 1987 2006 2030 .. ..- attr(*, "names")= chr [1:10] "V1" "V2" "V3" "V4" ... ..@ alleleSum : num [1:10, 1] 3 1 8 3 9 1 1 9 1 1 ..@ noMissCount: num [1:10, 1] 9 9 9 9 9 9 9 9 9 9

Examples

data(gDat)
gDat
plot(gDat)

Example output

Loading required package: haplo.stats
Loading required package: arsenal


Hola!

welcome to inevRsion package. 
 
 

type: manual() for full manual 
      vignette("inveRsion") for a quick start 

-Showing object of class: GenoDat- 

@genoDat: Genotype Data
   * integer matrix array ~ 9 subjects by  10 probes
   * first elements = 
   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
V1 0    1    1    0    1    0    1    1    0    0    
V2 1    0    1    1    1    0    0    1    0    0    
V3 0    0    2    0    2    0    0    2    0    0    
V4 1    0    1    1    1    0    0    1    0    0    
V5 0    0    1    1    1    0    0    1    0    0    
V6 0    0    0    0    0    0    0    0    0    0    
V7 1    0    0    0    0    1    0    0    1    1    
V8 0    0    2    0    2    0    0    2    0    0    
V9 0    0    0    0    1    0    0    1    0    0    

@lociPos: Probe Corrdinates
   * integer ~ 10 probes 
   * first 10 elements = 
  V1   V2   V3   V4   V5   V6   V7   V8   V9  V10 
 959 1268 1393 1467 1531 1761 1847 1987 2006 2030 

Other slots... 

@allaleSum: allele sum at each probe 
@noMissCount: number of no missings values 

-end showing GenoDat- 

inveRsion documentation built on Nov. 8, 2020, 5:08 p.m.