inversion-class: Class "inversion"

In inveRsion: Inversions in genotype data

Description

Internal class (not to be called by the user) that retrieves the output on the inversion model run in an ROI. inversionList is a list of objects of class inversion

Objects from the Class

Objects are created by calls to listInv(object, hapCode, geno, ROI, saveRes, thBic, all)

Slots

classification:

Object of class "vector" overall classification (majority vote) of each chromosome for all the trail segments in the ROI

leftBP:

Object of class "vector" left brake-points for each of the trial segments

rightBP:

Object of class "vector" right brake-points for each of the trial segments

bic:

Object of class "vector" BIC for the models on each trail segment

intLeftBP:

Object of class "vector" interval for the left brake-point, in the ROI

intRightBP:

Object of class "vector" interval for the right-brake point in the ROI

invFreq:

Object of class "numeric" overall inversion frequency

RR:

Object of class "list" classification of given by each of the trail segments.

Author(s)

Alejandro Caceres [e-mail]

See Also

listInv, inversionList

inveRsion documentation built on Nov. 8, 2020, 5:08 p.m.