getROIs-methods: Extracts regions of possible inversion events from "scan"

In inveRsion: Inversions in genotype data

Description

lists the regions of interest in a matrix, given by the overlapping of significant trial segments (of fixed window seize) that may be part of an inversion event.

Usage

getROIs(object, thBic)

Arguments

object	scan. Cromosome scanned for inversions with trial segments of fixed window size.
thBic	BIC threshold above which overlapping segments are considered for the definition of each ROI

Details

ROIs are defined as overlapping trial segments with BIC greater than thBIC. The output is a matrix for which each row is one ROI. The first two columns give intervals defining the left brake-points and the two subsequent columns are the intervals for the right brake-points. ROIs are given in mega-basis.

Value

matrix

Methods

signature(object = "scan")

list of regions of interest

Author(s)

Alejandro Caceres [e-mail]

See Also

scan

Examples

data(scanRes)
ROI <- getROIs(scanRes, thBic = 0)
ROI

inveRsion documentation built on Nov. 8, 2020, 5:08 p.m.