CNVtools: A package to test genetic association with CNV data

This package is meant to facilitate the testing of Copy Number Variant data for genetic association, typically in case-control studies.

AuthorChris Barnes <christopher.barnes@imperial.ac.uk> and Vincent Plagnol <vincent.plagnol@cimr.cam.ac.uk>
Date of publicationNone
MaintainerChris Barnes <christopher.barnes@imperial.ac.uk>
LicenseGPL-3
Version1.68.0

View on Bioconductor

Functions

A112 Man page
apply.ldf Man page
apply.pca Man page
CNV.fitModel Man page
cnv.plot Man page
CNVtest.binary Man page
CNVtest.binary.T Man page
CNVtest.qt Man page
CNVtest.qt.T Man page
CNVtest.select.model Man page
CNVtools Man page
CNVtools-package Man page
compact.data.frame Man page
EM.starting.point Man page
ExpandData Man page
get.model.spec Man page
getparams Man page
getQualityScore Man page
qt.plot Man page
test.posterior Man page

Files

CNVtools/DESCRIPTION
CNVtools/NAMESPACE
CNVtools/R
CNVtools/R/CNV.fitModel.R CNVtools/R/CNVtest.binary.R CNVtools/R/CNVtest.binary.T.R CNVtools/R/CNVtest.qt.R CNVtools/R/CNVtest.qt.T.R CNVtools/R/CNVtest.select.model.R CNVtools/R/EM.starting.point.R CNVtools/R/ExpandData.R CNVtools/R/apply.ldf.R CNVtools/R/apply.pca.R CNVtools/R/cnv.plot.R CNVtools/R/compact.data.frame.R CNVtools/R/get.model.spec.R CNVtools/R/getQualityScore.R CNVtools/R/getparams.R CNVtools/R/qt.plot.R CNVtools/R/test.posterior.R
CNVtools/build
CNVtools/build/vignette.rds
CNVtools/data
CNVtools/data/A112.RData
CNVtools/inst
CNVtools/inst/doc
CNVtools/inst/doc/CNVtools-vignette.R
CNVtools/inst/doc/CNVtools-vignette.Rnw
CNVtools/inst/doc/CNVtools-vignette.pdf
CNVtools/man
CNVtools/man/A112.Rd CNVtools/man/CNV.fitModel.Rd CNVtools/man/CNVtest.binary.Rd CNVtools/man/CNVtest.binary.T.Rd CNVtools/man/CNVtest.qt.Rd CNVtools/man/CNVtest.qt.T.Rd CNVtools/man/CNVtest.select.model.Rd CNVtools/man/CNVtools-package.Rd CNVtools/man/EM.starting.point.Rd CNVtools/man/ExpandData.Rd CNVtools/man/apply.ldf.Rd CNVtools/man/apply.pca.Rd CNVtools/man/cnv.plot.Rd CNVtools/man/compact.data.frame.Rd CNVtools/man/get.model.spec.Rd CNVtools/man/getQualityScore.Rd CNVtools/man/getparams.Rd CNVtools/man/qt.plot.Rd CNVtools/man/test.posterior.Rd
CNVtools/src
CNVtools/src/MyException.h
CNVtools/src/fitmodel.cpp
CNVtools/src/fitmodel.h
CNVtools/src/glm_test.cpp
CNVtools/src/glm_test.h
CNVtools/src/gmath.h
CNVtools/src/mla.cpp
CNVtools/src/routine.cpp
CNVtools/src/zeroin.c
CNVtools/vignettes
CNVtools/vignettes/CNVtools-vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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