CNVtools: A package to test genetic association with CNV data

This package is meant to facilitate the testing of Copy Number Variant data for genetic association, typically in case-control studies.

AuthorChris Barnes <christopher.barnes@imperial.ac.uk> and Vincent Plagnol <vincent.plagnol@cimr.cam.ac.uk>
Date of publicationNone
MaintainerChris Barnes <christopher.barnes@imperial.ac.uk>
LicenseGPL-3
Version1.68.0

View on Bioconductor

Files in this package

CNVtools/DESCRIPTION
CNVtools/NAMESPACE
CNVtools/R
CNVtools/R/CNV.fitModel.R CNVtools/R/CNVtest.binary.R CNVtools/R/CNVtest.binary.T.R CNVtools/R/CNVtest.qt.R CNVtools/R/CNVtest.qt.T.R CNVtools/R/CNVtest.select.model.R CNVtools/R/EM.starting.point.R CNVtools/R/ExpandData.R CNVtools/R/apply.ldf.R CNVtools/R/apply.pca.R CNVtools/R/cnv.plot.R CNVtools/R/compact.data.frame.R CNVtools/R/get.model.spec.R CNVtools/R/getQualityScore.R CNVtools/R/getparams.R CNVtools/R/qt.plot.R CNVtools/R/test.posterior.R
CNVtools/build
CNVtools/build/vignette.rds
CNVtools/data
CNVtools/data/A112.RData
CNVtools/inst
CNVtools/inst/doc
CNVtools/inst/doc/CNVtools-vignette.R
CNVtools/inst/doc/CNVtools-vignette.Rnw
CNVtools/inst/doc/CNVtools-vignette.pdf
CNVtools/man
CNVtools/man/A112.Rd CNVtools/man/CNV.fitModel.Rd CNVtools/man/CNVtest.binary.Rd CNVtools/man/CNVtest.binary.T.Rd CNVtools/man/CNVtest.qt.Rd CNVtools/man/CNVtest.qt.T.Rd CNVtools/man/CNVtest.select.model.Rd CNVtools/man/CNVtools-package.Rd CNVtools/man/EM.starting.point.Rd CNVtools/man/ExpandData.Rd CNVtools/man/apply.ldf.Rd CNVtools/man/apply.pca.Rd CNVtools/man/cnv.plot.Rd CNVtools/man/compact.data.frame.Rd CNVtools/man/get.model.spec.Rd CNVtools/man/getQualityScore.Rd CNVtools/man/getparams.Rd CNVtools/man/qt.plot.Rd CNVtools/man/test.posterior.Rd
CNVtools/src
CNVtools/src/MyException.h
CNVtools/src/fitmodel.cpp
CNVtools/src/fitmodel.h
CNVtools/src/glm_test.cpp
CNVtools/src/glm_test.h
CNVtools/src/gmath.h
CNVtools/src/mla.cpp
CNVtools/src/routine.cpp
CNVtools/src/zeroin.c
CNVtools/vignettes
CNVtools/vignettes/CNVtools-vignette.Rnw

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