getparams: Return mixture parameters

In CNVtools: A package to test genetic association with CNV data

Description

This function should be invisible to most users. Given the full expanded data frame, getparams returns the number of components, the copy number, the mixture model parameters for each batch, the likelihood of the model and the p(disease|c).

Usage

getparams(d)

Arguments

d	Full expanded data frame.

Value

ns	Number of batches
nc	Copy number of this model
nind	Number of individuals
lnL	log likelihood
alpha	Matrix. The mixture proportions
mean	Matrix. The mixture means
var	Matrix. The mixture variances
pdc	Matrix. The p(disease|c)

Author(s)

Vincent Plagnol [e-mail] and Chris Barnes [e-mail]

CNVtools documentation built on April 28, 2020, 6:06 p.m.