GSReg: Gene Set Regulation (GS-Reg)

A package for gene set analysis based on the variability of expressions. It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods.

Author
Bahman Afsari <bahman@jhu.edu>, Elana J. Fertig <ejfertig@jhmi.edu>
Date of publication
None
Maintainer
Bahman Afsari <bahman@jhu.edu>
License
GPL-2
Version
1.8.0

View on Bioconductor

Man pages

GSReg_GeneSets_DIRAC
Performs DIRAC for gene set analysis from the paper Eddy et...
GSReg_GeneSets_VReg.
Performs Gene Set Analysis using Expression Variation...
GSReg-package
A package for Gene Set Analysis based on the variability of...

Files in this package

GSReg/DESCRIPTION
GSReg/NAMESPACE
GSReg/R
GSReg/R/exportedFuncs.R
GSReg/R/internalFuncs.R
GSReg/build
GSReg/build/vignette.rds
GSReg/inst
GSReg/inst/doc
GSReg/inst/doc/GSReg.R
GSReg/inst/doc/GSReg.Rnw
GSReg/inst/doc/GSReg.pdf
GSReg/man
GSReg/man/GSReg-package.Rd
GSReg/man/GSReg_GeneSets_DIRAC.Rd
GSReg/man/GSReg_GeneSets_VReg..Rd
GSReg/src
GSReg/src/init.c
GSReg/src/kendallTauDistance.cc
GSReg/src/nij.cc
GSReg/src/vect2compC.cc
GSReg/vignettes
GSReg/vignettes/DIRAC.pdf
GSReg/vignettes/DIRACAn.rda
GSReg/vignettes/DIRAC_Parkinson.pdf
GSReg/vignettes/DIRACvsGSReg.pdf
GSReg/vignettes/GSReg.Rnw
GSReg/vignettes/GSReg.bib
GSReg/vignettes/Rplots.pdf
GSReg/vignettes/TheoreticalvsPermpvalue.pdf
GSReg/vignettes/plots-010.pdf
GSReg/vignettes/plots-011-1000perm.pdf
GSReg/vignettes/plots-011-1000perm_Parkinsons.pdf
GSReg/vignettes/plots-011.pdf
GSReg/vignettes/plots-015-1000perm.pdf
GSReg/vignettes/plots-016.pdf
GSReg/vignettes/plots-018.pdf