microbiomeExplorer: Microbiome Exploration App

The MicrobiomeExplorer R package is designed to facilitate the analysis and visualization of marker-gene survey feature data. It allows a user to perform and visualize typical microbiome analytical workflows either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows the application enables automated analysis report generation.

Package details

AuthorJoseph Paulson [aut], Janina Reeder [aut, cre], Mo Huang [aut], Genentech [cph, fnd]
Bioconductor views Classification Clustering DifferentialExpression GeneticVariability ImmunoOncology Metagenomics Microbiome MultipleComparison Normalization Sequencing Software Visualization
MaintainerJanina Reeder <reederj1@gene.com>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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microbiomeExplorer documentation built on Nov. 8, 2020, 8:16 p.m.