avgAbundance: Relative abundance plot module - server

In microbiomeExplorer: Microbiome Exploration App

Description

Relative abundance plot module - server

Usage

avgAbundance(
  input,
  output,
  session,
  aggDat,
  featLevel,
  featureSettings,
  normalizedData,
  reset
)

Arguments

input	shiny input
output	shiny output
session	shiny session
aggDat	aggregated MRExperiment
featLevel	chosen feature level (aggregation level)
featureSettings	analysis input settings passed over to this module
normalizedData	boolean indicating whether data has been normalized
reset	boolean reactive which resets the module if TRUE

Value

list storing plot clicks and number of features displayed (passed to feature plot module) as well as the R code to make plot

microbiomeExplorer documentation built on Nov. 8, 2020, 8:16 p.m.