featAbundance: Feature plot module - server

In microbiomeExplorer: Microbiome Exploration App

Description

Feature plot module - server

Usage

featAbundance(
  input,
  output,
  session,
  aggDat,
  featLevel,
  intraSettings,
  selectedFeat,
  featName,
  numOfFeats,
  ylabMode,
  normalizedData,
  reset
)

Arguments

input	shiny input
output	shiny output
session	shiny session
aggDat	aggregated MRExperiment
featLevel	chosen feature level (aggregation level)
intraSettings	analysis settings passed over from analysis input module
selectedFeat	feature selected via drop down element of analysis input
featName	plotly click event passed via relative abundance
numOfFeats	number of features shown in relative abundance plot (affects plotly click data)
ylabMode	character indication if raw \"Reads\" or \"Percentage\" should be shown
normalizedData	boolean indicating whether data has been normalized
reset	boolean reactive which resets the module if TRUE

Value

R code needed to build the feature plot

Author(s)

Janina Reeder

microbiomeExplorer documentation built on Nov. 8, 2020, 8:16 p.m.