dada2: Accurate, high-resolution sample inference from amplicon sequencing data
Version 1.8.0

The dada2 package infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and genus-species assignment by exact matching.

Package details

AuthorBenjamin Callahan <[email protected]>, Paul McMurdie, Susan Holmes
Bioconductor views Classification Metagenomics Microbiome Sequencing
MaintainerBenjamin Callahan <[email protected]>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

Try the dada2 package in your browser

Any scripts or data that you put into this service are public.

dada2 documentation built on May 2, 2018, 4:25 a.m.