dada2: Accurate, high-resolution sample inference from amplicon sequencing data
Version 1.6.0

The dada2 package infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and genus-species assignment by exact matching.

Package details

AuthorBenjamin Callahan <[email protected]>, Paul McMurdie, Susan Holmes
Bioconductor views Classification Metagenomics Microbiome Sequencing
MaintainerBenjamin Callahan <[email protected]>
LicenseLGPL-3
Version1.6.0
URL http://benjjneb.github.io/dada2/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("dada2")

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dada2 documentation built on Nov. 17, 2017, 10:21 a.m.