dada2: Accurate, high-resolution sample inference from amplicon sequencing data
Version 1.4.0

The dada2 package infers exact sequence variants (SVs) from amplicon data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier.

Package details

AuthorBenjamin Callahan <[email protected]>, Paul McMurdie, Susan Holmes
Bioconductor views Classification Metagenomics Microbiome Sequencing
MaintainerBenjamin Callahan <[email protected]>
LicenseLGPL-3
Version1.4.0
URL http://benjjneb.github.io/dada2/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("dada2")

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dada2 documentation built on May 31, 2017, 10:56 a.m.