makeTaxonomyFasta_SilvaNR: This function creates the dada2 assignTaxonomy training fasta...
In dada2: Accurate, high-resolution sample inference from amplicon sequencing data
Description
## Silva release v138
path <- "~/tax/Silva/v138"
dada2:::makeTaxonomyFasta_SilvaNR(file.path(path, "SILVA_138_SSURef_NR99_tax_silva.fasta.gz"),
file.path(path, "tax_slv_ssu_138.txt"),
"~/Desktop/silva_nr99_v138_train_set.fa.gz")
dada2:::makeTaxonomyFasta_SilvaNR(file.path(path, "SILVA_138_SSURef_NR99_tax_silva.fasta.gz"),
file.path(path, "tax_slv_ssu_138.txt"),
include.species=TRUE, "~/Desktop/silva_nr99_v138_wSpecies_train_set.fa.gz")
Usage
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makeTaxonomyFasta_SilvaNR(
fin,
ftax,
fout,
include.species = FALSE,
compress = TRUE
)
dada2 documentation built on Nov. 8, 2020, 6:48 p.m.
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Description
## Silva release v138 path <- "~/tax/Silva/v138" dada2:::makeTaxonomyFasta_SilvaNR(file.path(path, "SILVA_138_SSURef_NR99_tax_silva.fasta.gz"), file.path(path, "tax_slv_ssu_138.txt"), "~/Desktop/silva_nr99_v138_train_set.fa.gz") dada2:::makeTaxonomyFasta_SilvaNR(file.path(path, "SILVA_138_SSURef_NR99_tax_silva.fasta.gz"), file.path(path, "tax_slv_ssu_138.txt"), include.species=TRUE, "~/Desktop/silva_nr99_v138_wSpecies_train_set.fa.gz")
Usage
1 2 3 4 5 6 7 | makeTaxonomyFasta_SilvaNR(
fin,
ftax,
fout,
include.species = FALSE,
compress = TRUE
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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