Description Usage Arguments Value Examples
This function performs a Needleman-Wunsch alignment between two sequences.
1 2 3 4 5 6 7 8 9 10 11 | nwalign(
s1,
s2,
match = getDadaOpt("MATCH"),
mismatch = getDadaOpt("MISMATCH"),
gap = getDadaOpt("GAP_PENALTY"),
homo_gap = NULL,
band = -1,
endsfree = TRUE,
vec = FALSE
)
|
s1 |
(Required). |
s2 |
(Required). |
match |
(Optional). |
mismatch |
(Optional). |
gap |
(Optional). |
homo_gap |
(Optional). |
band |
(Optional). |
endsfree |
(Optional). |
vec |
(Optional). |
character(2)
. The aligned sequences.
1 2 3 4 |
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