This function creates the dada2 assignTaxonomy training fasta for the Silva .align file generated by the Mothur project.
1 | makeTaxonomyFasta_Silva(fin, ftax, fout, compress = TRUE)
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## Silva release v128 path <- "~/Desktop/Silva/Silva.nr_v128" dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v128.align"), file.path(path, "silva.nr_v128.tax"), "~/tax/silva_nr_v128_train_set.fa.gz")
## Silva release v132 path <- "~/Desktop/Silva/Silva.nr_v132" dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v132.align"), file.path(path, "silva.nr_v132.tax"), "~/tax/silva_nr_v132_train_set.fa.gz")
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