makeTaxonomyFasta_Silva: This function creates the dada2 assignTaxonomy training fasta...

Description Usage Details

View source: R/taxonomy.R

Description

## Silva release v128 path <- "~/Desktop/Silva/Silva.nr_v128" dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v128.align"), file.path(path, "silva.nr_v128.tax"), "~/tax/silva_nr_v128_train_set.fa.gz")

Usage

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makeTaxonomyFasta_Silva(fin, ftax, fout, compress = TRUE)

Details

## Silva release v132 path <- "~/Desktop/Silva/Silva.nr_v132" dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v132.align"), file.path(path, "silva.nr_v132.tax"), "~/tax/silva_nr_v132_train_set.fa.gz")


dada2 documentation built on Nov. 1, 2018, 2:28 a.m.