makeSpeciesFasta_Silva: This function creates the dada2 assignSpecies fasta file for...

Description Usage Details

View source: R/taxonomy.R

Description

## Silva release v128 dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_128_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v128.fa.gz")

Usage

1
makeSpeciesFasta_Silva(fin, fout, compress = TRUE)

Details

## Silva release v132 dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v132.fa.gz")

Output: 313502 sequences with genus/species binomial annotation output.


dada2 documentation built on May 2, 2018, 4:25 a.m.