Get vector of sequences from input object.
This function extracts the unique sequences from several different data objects, including
derep-class objects, as well as
data.frame objects that have both $sequence and $abundance columns. This function
getUniques function, but return only the names (i.e. the sequences).
(Required). The object from which to extract the sequences.
(Optional). Default FALSE.
Should duplicate sequences detected in
(Optional). Default TRUE. Suppress reporting of the detection and merger of duplicated input sequences.
character. A character vector of the sequences.
1 2 3 4 5
derep1 = derepFastq(system.file("extdata", "sam1F.fastq.gz", package="dada2")) dada1 <- dada(derep1, err=tperr1) getSequences(derep1) getSequences(dada1) getSequences(dada1$clustering)