A class representing dereplicated sequences



A list with the following three members.

  • $uniques: Named integer vector. Named by the unique sequence, valued by abundance.

  • $quals: Numeric matrix of average quality scores by position for each unique. Uniques are rows, positions are cols.

  • $map: Integer vector of length the number of reads, and value the index (in $uniques) of the unique to which that read was assigned.

This can be created from a FastQ sequence file using derepFastq

See Also


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