makeTaxonomyFasta_RDP: This function creates the dada2 assignTaxonomy training fasta...
In dada2: Accurate, high-resolution sample inference from amplicon sequencing data
Description
## RDP Trainset 16
path <- "~/Desktop/RDP/RDPClassifier_16S_trainsetNo16_rawtrainingdata"
dada2:::makeTaxonomyFasta_RDP(file.path(path, "trainset16_022016.fa"),
file.path(path, "trainset16_db_taxid.txt"),
"~/tax/rdp_train_set_16.fa.gz")
Usage
1
makeTaxonomyFasta_RDP(fin, fdb, fout, compress = TRUE)
dada2 documentation built on Nov. 8, 2020, 6:48 p.m.
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Description
## RDP Trainset 16 path <- "~/Desktop/RDP/RDPClassifier_16S_trainsetNo16_rawtrainingdata" dada2:::makeTaxonomyFasta_RDP(file.path(path, "trainset16_022016.fa"), file.path(path, "trainset16_db_taxid.txt"), "~/tax/rdp_train_set_16.fa.gz")
Usage
1 | makeTaxonomyFasta_RDP(fin, fdb, fout, compress = TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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