qtables2: Internal tables function

Description Usage Arguments Value

View source: R/sequenceIO.R

Description

Internal function to replicate ShortRead::tables functionality while also returning average quals and a map from reads to uniques

Usage

1
qtables2(x, qeff = FALSE, handle.zerolen = TRUE)

Arguments

x

ShortReadQ. The ShortReadQ-class object to table (or dereplicate).

qeff

logical(1). Calculate average quality by first transforming to expected error rate.

handle.zerolen

logical(1). Default TRUE. If TRUE, gracefully excludes zero-length sequences.

Value

List. Matches format of derep-class object.


dada2 documentation built on Nov. 8, 2020, 6:48 p.m.