Files in dada2
Accurate, high-resolution sample inference from amplicon sequencing data

.travis.yml
DESCRIPTION
README.md
NAMESPACE
NEWS
inst/NEWS
inst/CITATION
inst/doc/dada2-intro.html
inst/doc/dada2-intro.R inst/doc/dada2-intro.Rmd
inst/extdata/example_species_assignment.fa.gz
inst/extdata/example_train_set.fa.gz
inst/extdata/sam2F.fastq.gz
inst/extdata/sam1F.fastq.gz
inst/extdata/example_seqs.fa
inst/extdata/phix_genome.fa
inst/extdata/sam2R.fastq.gz
inst/extdata/sam1R.fastq.gz
inst/include/dada2_RcppExports.h
inst/include/dada2.h
src/Makevars
src/chimera.cpp
src/RcppExports.cpp
src/pval.cpp
src/evaluate.cpp
src/Makevars.win
src/filter.cpp
src/error.cpp
src/strmap.h
src/Rmain.cpp
src/cluster.cpp
src/dada.h
src/nwalign_vectorized.cpp
src/misc.cpp
src/taxonomy.cpp
src/nwalign_endsfree.cpp
src/strmap.cpp
src/kmers.cpp
build/vignette.rds
R/chimeras.R R/multiSample.R R/sequenceIO.R R/RcppExports.R R/taxonomy.R R/errorModels.R R/allClasses.R R/filter.R R/allPackage.R R/show-methods.R R/dada.R R/paired.R R/plot-methods.R R/misc.R
vignettes/Clearness.css
vignettes/dada2-intro.Rmd man/c-dada-method.Rd man/c-derep-method.Rd man/uniques-vector.Rd man/getSequences.Rd man/names-set-dada-ANY-method.Rd man/mergePairs.Rd man/isBimeraDenovo.Rd man/errHmpF.Rd man/nwalign.Rd man/isBimeraDenovoTable.Rd man/names-set-derep-ANY-method.Rd man/collapseNoMismatch.Rd man/errHmpR.Rd man/getUniques.Rd man/plotErrors.Rd man/makeTaxonomyFasta_RDP.Rd man/assignSpecies.Rd man/fastqPairedFilter.Rd man/getErrors.Rd man/getDadaOpt.Rd man/dada2-package.Rd man/errBalancedF.Rd man/makeSpeciesFasta_Silva.Rd man/errExtremeR.Rd man/makeSequenceTable.Rd man/removeBimeraDenovo.Rd man/errExtremeF.Rd man/errBalancedR.Rd man/derep-class.Rd man/plotComplementarySubstitutions.Rd man/qtables2.Rd man/plotQualityProfile.Rd man/noqualErrfun.Rd man/uniquesToFasta.Rd man/tperr1.Rd man/show-methods.Rd man/writeFasta.Rd man/nwhamming.Rd man/loessErrfun.Rd man/inflateErr.Rd man/evaluate_kmers.Rd man/derepFastq.Rd man/makeSpeciesFasta_RDP.Rd man/isShiftDenovo.Rd man/setDadaOpt.Rd man/learnErrors.Rd man/filterAndTrim.Rd man/dada_to_seq_table.Rd man/dada-class.Rd man/assignTaxonomy.Rd man/dada.Rd man/mergePairsByID.Rd man/isBimera.Rd man/makeTaxonomyFasta_Silva.Rd man/isPhiX.Rd man/mergeSequenceTables.Rd man/derepFasta.Rd man/fastqFilter.Rd man/addSpecies.Rd
data/errBalancedR.rda
data/errBalancedF.rda
data/tperr1.rda
data/errHmpF.rda
data/errExtremeF.rda
data/errHmpR.rda
data/errExtremeR.rda
dada2 documentation built on Nov. 17, 2017, 10:21 a.m.