benjjneb/decontam: Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Version 0.20.0

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.

Getting started

Package details

AuthorBenjamin Callahan <benjamin.j.ca[email protected]>, Nicole Marie Davis
Bioconductor views Classification Metagenomics Microbiome Sequencing
MaintainerBenjamin Callahan <[email protected]>
LicenseArtistic-2.0
Version0.20.0
URL https://github.com/benjjneb/decontam
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("benjjneb/decontam")
benjjneb/decontam documentation built on Nov. 22, 2017, 2:15 p.m.