katiasmirn/PERFect: Permutation filtration for microbiome data

PERFect is a novel permutation filtering approach designed to address two unsolved problems in microbiome data processing: (i) define and quantify loss due to filtering by implementing thresholds, and (ii) introduce and evaluate a permutation test for filtering loss to provide a measure of excessive filtering.

Getting started

Package details

Author Ekaterina Smirnova <ekaterina.smirnova@vcuhealth.org>, Quy Cao <quy.cao@umontana.edu>
Bioconductor views Classification Metagenomics Microbiome Sequencing Software
MaintainerQuy Cao <quy.cao@umontana.edu>
URL https://github.com/katiasmirn/PERFect
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
katiasmirn/PERFect documentation built on Sept. 17, 2019, 11:54 a.m.