pvals_Order: Taxa importance ordering by PERFect p-values
In katiasmirn/PERFect: Permutation filtration for microbiome data

Description Usage Arguments Value Author(s) References See Also Examples

This function orders taxa by increasing significance of simultaneous PERFect p-values.

1	pvals_Order(Counts, res_sim)

`Counts`	OTU COUNTS table, where taxa are columns and samples are rows of the table. It should be a in data frame format with columns corresponding to taxa names.
`res_sim`	Output of `PERFect_sim()` function.

Order_pvals Taxa names in increasing order of p-values significance.

Ekaterina Smirnova

Smirnova, E., Huzurbazar, H., Jafari, F. “PERFect: permutation filtration of microbiome data", to be submitted.

PERFect_sim, PERFect_perm

data(mock2)

# Proportion data matrix
Prop <- mock2$Prop

# Counts data matrix
Counts <- mock2$Counts

# Perform simultaenous filtering of the data
res_sim <- PERFect_sim(X=Counts)

#order according to p-values
pvals_sim <- pvals_Order(Counts, res_sim)