mock: Oral artificial communities data

In katiasmirn/PERFect: Permutation filtration for microbiome data

Description

This dataset comes from the MBQC project, a collaborative effort designed to comprehensively evaluate sample processing and computational methods for human microbiome data analysis (Sinha et al., 2015). There are four types of samples in this project: (1) 11 unique fresh stool samples; (2) seven unique freeze-dried stool samples; (3) two unique chemostat samples generated from a Robogut; and (4) two artificial colonies representing the gut and oral cavity. These samples were randomly sequenced at 15 laboratories and then randomly distributed to 9 bioinformatics facilities for microbiome analyses. Here, we consider the oral artificial communities data which comprised of 22 true taxa from the human oral cavity.

Usage

data(mock)

Format

This phyloseq object contains an OTU table with 1016 samples and 27211 taxa, its metadata and taxomomy.

katiasmirn/PERFect documentation built on Sept. 17, 2019, 11:54 a.m.