mock: Oral artificial communities data

Description Usage Format

Description

This dataset comes from the MBQC project, a collaborative effort designed to comprehensively evaluate sample processing and computational methods for human microbiome data analysis (Sinha et al., 2015). There are four types of samples in this project: (1) 11 unique fresh stool samples; (2) seven unique freeze-dried stool samples; (3) two unique chemostat samples generated from a Robogut; and (4) two artificial colonies representing the gut and oral cavity. These samples were randomly sequenced at 15 laboratories and then randomly distributed to 9 bioinformatics facilities for microbiome analyses. Here, we consider the oral artificial communities data which comprised of 22 true taxa from the human oral cavity.

Usage

1

Format

This phyloseq object contains an OTU table with 1016 samples and 27211 taxa, its metadata and taxomomy.


katiasmirn/PERFect documentation built on Sept. 17, 2019, 11:54 a.m.