NCw_Order: Taxa importance ordering by the weighted number of connected...
In katiasmirn/PERFect: Permutation filtration for microbiome data

Description Usage Arguments Value Author(s) References Examples

Taxa importance ordering by the weighted number of connected taxa

1	NCw_Order(Counts)

Counts

OTU COUNTS table, where taxa are columns and samples are rows of the table. It should be a in data frame format with columns corresponding to taxa names.

NCW Taxa names in increasing order of the weighted number of connected taxa.

Ekaterina Smirnova

Smirnova, E., Huzurbazar, H., Jafari, F. “PERFect: permutation filtration of microbiome data", to be submitted.

data(mock2)
# Proportion data matrix
Prop <- mock2$Prop

# Counts data matrix
Counts <- mock2$Counts

#arrange counts in order of increasing number of samples taxa are present in
NCw <- NCw_Order(Counts)