Man pages for katiasmirn/PERFect
Permutation filtration for microbiome data
| DiffFiltLoss | Difference in filtering loss |
| FiltLoss | Filtering Loss |
| FL_J | Filtering Loss for a set of filtered taxa J |
| knight | Bacterial Diversity in Neonatal Intensive Care Units (NICUs)... |
| mock | Oral artificial communities data |
| mock2 | Bias experiment data |
| NC_Order | Taxa importance ordering by the number of connected taxa |
| NCw_Order | Taxa importance ordering by the weighted number of connected... |
| NP_Order | Taxa importance ordering by the number of occurrences of the... |
| PERFect_perm | Permutation PERFect filtering for microbiome data |
| PERFect_perm_reorder | Permutation PERFect filtering for microbiome data |
| PERFect_sim | Simulation PERFect filtering for microbiome data |
| pvals_Order | Taxa importance ordering by PERFect p-values |
| pvals_Plots | Plots of PERFect p-values |
| ravel | Ravel vaginal microbiome data |
| salter | Reagent and laboratory contamination data |
| TraditR1 | Traditional Filtering Rule 1 |
| TraditR2 | Traditional Filtering Rule 2 |
