mmnet: A metagenomic pipeline for systems biology

This package gives the implementations microbiome metabolic network constructing and analyzing. It introduces a unique metagenomic systems biology approach, mapping metagenomic data to the KEGG global metabolic pathway and constructing a systems-level network. The system-level network and the next topological analysis will be of great help to analysis the various functional properties, including regulation and metabolic functionality of the metagenome.

Package details

AuthorYang Cao, Fei Li
Bioconductor views GraphsAndNetwork Microbiome Pathways Sequencing SystemsBiology
MaintainerYang Cao <>, Fei Li <>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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mmnet documentation built on May 31, 2017, 3:25 p.m.