Files in mmnet
A metagenomic pipeline for systems biology
.BBSoptions
DESCRIPTION
NAMESPACE
R
R/BIOM-class.R
R/IO-methods.R
R/allClasses.R
R/allPackage.R
R/checkMgrastMetagenome.R
R/constructMetabolicNetwork.R
R/constuctSSN.R
R/delMgrastInbox.R
R/differentialAnalyzeNet.R
R/estimateAbundance.R
R/generateMgrastWebkey.R
R/generateMgrastWebsession.R
R/getKOPathwayInfo.R
R/getMgrastAnnotation.R
R/listMgrastInbox.R
R/listMgrastProject.R
R/loadMetabolicData.R
R/loginMgrast.R
R/preprocessKOMetabolites.R
R/saveMetabolicData.R
R/showMetagenomicNet.R
R/submitMgrastJob.R
R/topologicalAnalyzeNet.R
R/updateKEGGPathway.R
R/uploadMgrast.R
R/validity-methods.R
build
build/vignette.rds
data
data/RefDbcache.rda
data/anno.rda
data/datalist
inst
inst/doc
inst/doc/mmnet.R
inst/doc/mmnet.Rnw
inst/doc/mmnet.pdf
inst/extdata
inst/extdata/IMGSample.tab
man
man/RefDbcache.Rd
man/anno.Rd
man/checkMgrastMetagenome.Rd
man/constructMetabolicNetwork.Rd
man/constructSSN.Rd
man/delMgrastInbox.Rd
man/differentialAnalyzeNet.Rd
man/estimateAbundance.Rd
man/generateMgrastWebkey.Rd
man/generateMgrastWebsession.Rd
man/getKOPathwayInfo.Rd
man/getMgrastAnnotation.Rd
man/listMgrastInbox.Rd
man/listMgrastProject.Rd
man/loadMetabolicData.Rd
man/loginMgrast.Rd
man/mmnet-package.Rd
man/preprocessKOMetabolites.Rd
man/saveMetabolicData.Rd
man/showMetagenomicNet.Rd
man/submitMgrastJob.Rd
man/topologicalAnalyzeNet.Rd
man/updateKEGGPathway.Rd
man/uploadMgrast.Rd
vignettes
vignettes/Refnet.png
vignettes/mmnet.Rnw
vignettes/mmnet.bib
