checkMgrastMetagenome: Check whether the MGRAST annotation is completed

In mmnet: A metagenomic pipeline for systems biology

Description

Check the whether MGRAST annotation is comleted of the metagenomic sequence.

Usage

checkMgrastMetagenome(login.info, metagenome.id, public = TRUE)

Arguments

login.info	login.info a list of login info generated after user login into MGRAST which consists of webkey of the file, the invlid time of your webkey, cookie, websession and curlhandle. It is unique for each users. Only needed while checking the private project.
metagenome.id	a chracter, metagenome.id the metagenome id MGRAST assigned while user submit metagenome sequence to MGRAST.
public	logical, whether the metagenome of your MGRAST project is public

Value

logical, whether the metagenome annotation is completed, it will be NULL while metagenome annotation is not completed.

Examples

checkMgrastMetagenome(metagenome.id = "4440616.3")

mmnet documentation built on May 31, 2017, 3:25 p.m.