constructMetabolicNetwork: Metabolic network construction of microbiome
In mmnet: A metagenomic pipeline for systems biology

Description Usage Arguments Value See Also Examples

View source: R/constructMetabolicNetwork.R

Metabolic network construction according to the metabolites among enzymes

1	constructMetabolicNetwork(path = Sys.getenv("HOME"))

path

character, the path that reference data saved, default is the user's HOME directory. If does not exits, prestored reference metabolic data (RefDbCache) in mmnet will be loaded.

referce metabolic network of igraph

loadMetabolicData

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## may take a long time
# data(RefDbcache)
# constructMetabolicNetwork(RefDbcache)

Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: biom